PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca25155.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 285aa    MW: 32830.9 Da    PI: 5.2718
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca25155.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.51.5e-5481331128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdeel+++yL++k +++++++  +i e+d +kvePwdLpk++k +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkdke+++ ++ l
  Dca25155.1   8 LPPGFRFHPTDEELITHYLCQKFHDESFNA-VAIGEADFNKVEPWDLPKMAKMGEKEWYFFCVKDRKYPTGLRTNRATEAGYWKATGKDKEIYR-EKLL 104
                 79*************************999.67***************999999****************************************.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg kktLvfy+grapkgekt+Wvmhe+r+
  Dca25155.1 105 VGRKKTLVFYTGRAPKGEKTNWVMHEFRI 133
                 ***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-605158IPR003441NAC domain
PROSITE profilePS5100555.5168158IPR003441NAC domain
PfamPF023651.3E-279133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEDEQIELPP GFRFHPTDEE LITHYLCQKF HDESFNAVAI GEADFNKVEP WDLPKMAKMG  60
EKEWYFFCVK DRKYPTGLRT NRATEAGYWK ATGKDKEIYR EKLLVGRKKT LVFYTGRAPK  120
GEKTNWVMHE FRIDGPLAKL THILNSKSEW VISRVFDKGL GLKKSIDDPE SSSHEEVQHQ  180
SHLPSLAESS SPINNEATIT TDANPSHVTC FSDTPLIGSP ERDMGPSCLE IMTYEEMVKF  240
GYVDSYFEQD QSIFKYLVQE KDSTPKVKVT QEHVSSDLND NLWTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-52515814165NO APICAL MERISTEM PROTEIN
1ut4_B1e-52515814165NO APICAL MERISTEM PROTEIN
1ut7_A1e-52515814165NO APICAL MERISTEM PROTEIN
1ut7_B1e-52515814165NO APICAL MERISTEM PROTEIN
3swm_A1e-52515817168NAC domain-containing protein 19
3swm_B1e-52515817168NAC domain-containing protein 19
3swm_C1e-52515817168NAC domain-containing protein 19
3swm_D1e-52515817168NAC domain-containing protein 19
3swp_A1e-52515817168NAC domain-containing protein 19
3swp_B1e-52515817168NAC domain-containing protein 19
3swp_C1e-52515817168NAC domain-containing protein 19
3swp_D1e-52515817168NAC domain-containing protein 19
4dul_A1e-52515814165NAC domain-containing protein 19
4dul_B1e-52515814165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693263.11e-101PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ22e-91NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0J8BD421e-101A0A0J8BD42_BETVU; Uncharacterized protein
STRINGPGSC0003DMT4000033806e-92(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-91NAC domain containing protein 100